FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane4_Index5_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 20667670 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4351240 | 2.617764 | 5.483373 | 1 |
| CCTGG | 4344675 | 2.5990746 | 6.266369 | 1 |
| CTTCT | 4576920 | 2.5295484 | 5.7267513 | 1 |
| CTGGA | 4185150 | 2.4704435 | 8.873981 | 1 |
| TCCAG | 4110345 | 2.3768394 | 5.8780646 | 2 |
| CTGCT | 4062105 | 2.3356981 | 5.1552014 | 1 |
| CTCCT | 4100060 | 2.3094761 | 7.7878222 | 1 |
| CTGGG | 3769740 | 2.302052 | 8.667321 | 1 |
| CAGGA | 3791090 | 2.250526 | 5.493905 | 1 |
| CCCAG | 3734920 | 2.2011845 | 7.415673 | 1 |
| CTTCA | 3955420 | 2.1984587 | 5.802502 | 1 |
| CTCCA | 3863690 | 2.1886766 | 8.247443 | 1 |
| CTCTG | 3584290 | 2.060956 | 6.4982305 | 1 |
| CTGCA | 3452560 | 1.9964703 | 5.055841 | 1 |
| CTGGC | 3146715 | 1.88243 | 5.4964533 | 1 |
| TGGAA | 3229685 | 1.8811635 | 5.1210227 | 2 |
| CTGAA | 3272085 | 1.8670185 | 5.611231 | 1 |
| CTCAG | 3040500 | 1.7581931 | 6.2953 | 1 |
| CTTTG | 3029465 | 1.7091411 | 5.0860624 | 1 |
| CTGGT | 2842125 | 1.6682112 | 5.1854434 | 1 |
| CTTGG | 2783360 | 1.6337186 | 5.3962646 | 1 |
| CTCCC | 2727735 | 1.565954 | 5.2423525 | 1 |